Reconciling Simulations and Experiments With BICePs: A Review

Vincent A. Voelz, Yunhui Ge, Robert M. Raddi

Research output: Contribution to journalReview articlepeer-review

7 Scopus citations

Abstract

Bayesian Inference of Conformational Populations (BICePs) is an algorithm developed to reconcile simulated ensembles with sparse experimental measurements. The Bayesian framework of BICePs enables population reweighting as a post-simulation processing step, with several advantages over existing methods, including the proper use of reference potentials, and the estimation of a Bayes factor-like quantity called the BICePs score for model selection. Here, we summarize the theory underlying this method in context with related algorithms, review the history of BICePs applications to date, and discuss current shortcomings along with future plans for improvement.

Original languageEnglish
Article number661520
JournalFrontiers in Molecular Biosciences
Volume8
DOIs
StatePublished - May 11 2021
Externally publishedYes

Keywords

  • Bayesian inference
  • HDX protection factors
  • MCMC
  • conformational populations
  • cyclic peptides
  • molecular simulation
  • peptidomimetics
  • peptoids

Fingerprint

Dive into the research topics of 'Reconciling Simulations and Experiments With BICePs: A Review'. Together they form a unique fingerprint.

Cite this