@inbook{33e0c32185b84089922567874ed575fa,
title = "Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET",
abstract = "Single positioned nucleosomes have been extensively employed as simple model experimental systems for analysis of various intranuclear processes. Here we describe an experimental system containing positioned mononucleosomes allowing transcription by various RNA polymerases. Each DNA template contains a pair of fluorescent labels (Cy3 and Cy5) allowing measuring relative distances between the neighboring coils of nucleosomal DNA using Forster resonance energy transfer (FRET). The single-particle FRET (spFRET) approach for analysis of DNA uncoiling from the histone octamer during transcription through chromatin is described in detail.",
keywords = "DNA-Directed RNA Polymerases/metabolism, Fluorescence Resonance Energy Transfer/methods, In Vitro Techniques, Nucleosomes/genetics, Transcription, Genetic",
author = "Kudryashova, {Kseniya S.} and Chertkov, {Oleg V.} and Nikitin, {Dmitry V.} and Pestov, {Nikolai A.} and Kulaeva, {Olga I.} and Efremenko, {Anastasija V.} and Solonin, {Alexander S.} and Kirpichnikov, {Mikhail P.} and Studitsky, {Vasily M.} and Feofanov, {Alexey V.}",
note = "Publisher Copyright: {\textcopyright} Springer Science+Business Media New York 2015. All rights are reserved.",
year = "2015",
month = mar,
day = "31",
doi = "10.1007/978-1-4939-2474-5_23",
language = "English",
isbn = "9781493924738",
volume = "1288",
series = "Methods in molecular biology (Clifton, N.J.)",
publisher = "Springer New York",
pages = "395--412",
booktitle = "Chromatin Protocols",
address = "United States",
}