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Comparison of statistical methods for detection of serum lipid biomarkers for mesothelioma and asbestos exposure

  • Rengyi Xu
  • , Clementina Mesaros
  • , Liwei Weng
  • , Nathaniel W. Snyder
  • , Anil Vachani
  • , Ian A. Blair
  • , Wei Ting Hwang

Research output: Contribution to journalArticlepeer-review

1 Scopus citations

Abstract

Aim: We compared three statistical methods in selecting a panel of serum lipid biomarkers for mesothelioma and asbestos exposure. Materials & methods: Serum samples from mesothelioma, asbestos-exposed subjects and controls (40 per group) were analyzed. Three variable selection methods were considered: top-ranked predictors from univariate model, stepwise and least absolute shrinkage and selection operator. Crossed-validated area under the receiver operating characteristic curve was used to compare the prediction performance. Results: Lipids with high crossed-validated area under the curve were identified. Lipid with mass-to-charge ratio of 372.31 was selected by all three methods comparing mesothelioma versus control. Lipids with mass-to-charge ratio of 1464.80 and 329.21 were selected by two models for asbestos exposure versus control. Conclusion: Different methods selected a similar set of serum lipids. Combining candidate biomarkers can improve prediction.

Original languageEnglish
Pages (from-to)547-556
Number of pages10
JournalBiomarkers in Medicine
Volume11
Issue number7
DOIs
StatePublished - Jul 2017

Keywords

  • LASSO
  • PCA
  • asbestos exposure
  • biomarker
  • mesothelioma
  • stepwise regression

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