Abstract
A public server for evaluating the accuracy of protein sequence alignment methods is presented. CASA is an implementation of the alignment accuracy benchmark presented by Sauder et al. (Proteins, 40, 6-22, 2000). The benchmark currently contains 39 321 pairwise protein structure alignments produced with the CE program from SCOP domain definitions. The server produces graphical and tabular comparisons of the accuracy of a user's input sequence alignments with other commonly used programs, such as BLAST, PSI-BLAST, Clustal W, and SAM-T99.
Original language | English |
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Pages (from-to) | 496-497 |
Number of pages | 2 |
Journal | Bioinformatics |
Volume | 18 |
Issue number | 3 |
DOIs | |
State | Published - 2002 |
Keywords
- Algorithms
- Calibration
- Computing Methodologies
- Databases, Protein
- Evaluation Studies as Topic
- Internet
- National Library of Medicine (U.S.)
- Proteins/chemistry
- Sequence Alignment/methods
- Sequence Analysis, Protein/methods
- Software
- United States