An evolution of minimalist models for protein folding: From the behavior of protein-like polymers to protein function

John Karanicolas, Charles L. Brooks

Research output: Contribution to journalReview articlepeer-review

Abstract

This overview highlights several folding studies that have used simple models to describe specific proteins, beyond just the shared topology of a protein family. A shift in focus to specific proteins (rather than protein-like polymers) facilitates comparison to experiment, and more detailed models allow rationalization of specific experimental observations, and the suggestion of specific, testable predictions. This new class of models and their investigation opens the door to understanding the origins of folding behavior in the context of evolved structure and function.

Original languageEnglish
Pages (from-to)127-133
Number of pages7
JournalDrug Discovery Today: BIOSILICO
Volume2
Issue number3
DOIs
StatePublished - May 2004
Externally publishedYes

Keywords

  • Bioinformatics
  • Go model
  • Structural Biology
  • folding mechanism
  • folding pathway
  • minimalist model
  • protein folding
  • transition state

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