Research output per year
Research output per year
- 25 results
Search results
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2025
Effect of Fatty Acyl Composition for Lysophosphatidylinositol on Neuroinflammatory Responses in Primary Neuronal Cultures
Brenneman, D. E., Petkanas, D., Ippolito, M. & Ward, S. J., Jan 8 2025, (Research square).Research output: Working paper › Preprint
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Evolutionary sparse learning with paired species contrast reveals the shared genetic basis of convergent traits
Allard, J. B., Sharma, S., Patel, R., Sanderford, M., Tamura, K., Vucetic, S., Gerhard, G. S. & Kumar, S., Dec 8 2025, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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MyESL: Sparse learning in molecular evolution and phylogenetic analysis
Sanderford, M., Sharma, S., Stecher, G., Liu, J., Ye, J. & Kumar, S., Dec 9 2025, (ArXiv).Research output: Working paper › Preprint
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R3f: An R package for evolutionary dates, rates, and priors using the relative rate framework
Tao, Q., Sharma, S., Tamura, K. & Kumar, S., Feb 7 2025, (ArXiv).Research output: Working paper › Preprint
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2024
A Retinoic Acid:YAP1 signaling axis controls atrial lineage commitment
Abraham, E., Volmert, B., Roule, T., Huang, L., Yu, J., Williams, A. E., Cohen, H. M., Douglas, A., Megill, E., Morris, A., Stronati, E., Fueyo, R., Zubillaga, M., Elrod, J. W., Akizu, N., Aguirre, A. & Estaras, C., Jun 12 2024, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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A Structural Mechanism for Noncanonical GPCR Signal Transduction in the Hedgehog Pathway
Steiner, W. P., Iverson, N., Venkatakrishnan, V., Wu, J., Stepniewski, T. M., Michaelson, Z., Bröckel, J. W., Zhu, J.-F., Bruystens, J., Lee, A., Nelson, I., Bertinetti, D., Arveseth, C. D., Tan, G., Spaltenstein, P., Xu, J., Hüttenhain, R., Kay, M., Herberg, F. W. & Selent, J. & 4 others, , Nov 1 2024, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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Control of OPC proliferation and repopulation by the intellectual disability gene PAK1 under homeostatic and demyelinating conditions
Wang, Y., Kim, B., Gong, S., Park, J., Zhu, M., Wong, E. M., Park, A. Y., Chernoff, J. & Guo, F., Apr 29 2024, (bioRxiv).Research output: Working paper › Preprint
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Derivation of human primary prostate epithelial cell lines by differentially targeting the CDKN2A locus along with expression of hTERT
Wasserman, J. S., Fowle, H., Hashmi, R., Atar, D., Patel, K., Yarmahmoodi, A., Macfarlane, A. W., Tan, Y., Cukierman, E., Gligorijevic, B., Karami, A., Whelan, K. A., Campbell, K. S. & Graña, X., Apr 6 2024, (Research square).Research output: Working paper › Preprint
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KRAS mutation-selective requirement for ACSS2 in colorectal adenoma formation
Budyagan, K., Cannon, A. C., Chatoff, A., Snyder, N. W., Kurimchak, A. M., Duncan, J. S. & Chernoff, J., Jan 22 2024, (Research square).Research output: Working paper › Preprint
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Musashi-2 (MSI2) regulation of DNA damage response in lung cancer
Bychkov, I., Deneka, A., Topchu, I., Pangeni, R., Ismail, A., Lengner, C., Karanicolas, J., Golemis, E., Makhov, P. & Boumber, Y., Mar 11 2024, (Research square).Research output: Working paper › Preprint
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Netrin G1 Ligand is a new stromal immunomodulator that promotes pancreatic cancer
Vendramini-Costa, D. B., Francescone, R., Franco-Barraza, J., Luong, T., Graves, M., de Aquino, A. M., Steele, N., Gardiner, J. C., Dos Santos, S. A. A., Ogier, C., Malloy, E., Borghaei, L., Martinez, E., Zhigarev, D. I., Tan, Y., Lee, H., Zhou, Y., Cai, K. Q., Klein-Szanto, A. J. & Wang, H. & 4 others, , Apr 18 2024, (bioRxiv).Research output: Working paper › Preprint
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The Burden of Cancer and Pre-cancerous Conditions Among Transgender Individuals in a Large Healthcare Network
Yang, S., Li, Y., Wheldon, C. W., Prosperi, M., George, T. J., Shenkman, E. A., Wang, F., Bian, J. & Guo, Y., Feb 26 2024, (medRxiv).Research output: Working paper › Preprint
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αKG-mediated carnitine synthesis promotes homologous recombination via histone acetylation
Uboveja, A., Huang, Z., Buj, R., Amalric, A., Wang, H., Tangudu, N. K., Cole, A. R., Megill, E., Kantner, D., Chatoff, A., Ahmad, H., Marcinkiewicz, M. M., Disharoon, J. A., Graff, S., Dahl, E. S., Hempel, N., Stallaert, W., Sidoli, S., Bitler, B. G. & Long, D. T. & 2 others, , Feb 11 2024, (bioRxiv).Research output: Working paper › Preprint
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2023
Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls
Pivirotto, A. M., Platt, A., Patel, R., Kumar, S. & Hey, J., Sep 11 2023, (bioRxiv).Research output: Working paper › Preprint
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BRCA1 secondary splice-site mutations drive exon-skipping and PARP inhibitor resistance
Australian Ovarian Cancer Study, Nesic, K., Krais, J. J., Wang, Y., Vandenberg, C. J., Patel, P., Cai, K. Q., Kwan, T., Lieschke, E., Ho, G. Y., Barker, H. E., Bedo, J., Casadei, S., Farrell, A., Radke, M., Shield-Artin, K., Penington, J. S., Geissler, F., Kyran, E. & Betsch, R. & 18 others, , Aug 28 2023, 1 ed., p. 158, 1 p. (medRxiv : the preprint server for health sciences).Research output: Working paper › Preprint
Open Access2 Scopus citations -
Drug Discovery in Low Data Regimes: Leveraging a Computational Pipeline for the Discovery of Novel SARS-CoV-2 Nsp14-MTase Inhibitors
Nigam, A., Hurley, M. F. D., Li, F., Konkoĭová, E., Klíma, M., Trylčová, J., Pollice, R., Çinaroǧlu, S. S., Levin-Konigsberg, R., Handjaya, J., Schapira, M., Chau, I., Perveen, S., Ng, H. L., Ümit Kaniskan, H., Han, Y., Singh, S., Gorgulla, C., Kundaje, A. & Jin, J. & 6 others, , 2023, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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FAM122A ensures cell cycle interphase progression and checkpoint control as a SLiM-dependent substrate-competitive inhibitor to the B55⍺/PP2A phosphatase
Wasserman, J. S., Faezov, B., Patel, K. R., Kurimchak, A. N., Palacio, S. M., Fowle, H., McEwan, B. C., Xu, Q., Zhao, Z., Cressey, L., Johnson, N., Duncan, J. S., Kettenbach, A. N., Dunbrack, R. L. & Grana, X., 2023, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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Poor Generalization by Current Deep Learning Models for Predicting Binding Affinities of Kinase Inhibitors
Ong, W. J. G., Kirubakaran, P. & Karanicolas, J., Aug 6 2023, (bioRxiv).Research output: Working paper › Preprint
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Rationally designed inhibitors of the Musashi protein-RNA interaction by hotspot mimicry
Bai, N., Adeshina, Y., Bychkov, I., Xia, Y., Gowthaman, R., Miller, S. A., Gupta, A. K., Johnson, D. K., Lan, L., Golemis, E. A., Makhov, P. B., Xu, L., Pillai, M. M., Boumber, Y. & Karanicolas, J., Dec 10 2023, (Research square).Research output: Working paper › Preprint
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Ribosomal protein control of hematopoietic stem cell transformation through direct, non-canonical regulation of metabolism
Harris, B., Singh, D. K., Verma, M., Fahl, S. P., Rhodes, M., Sprinkle, S. R., Wang, M., Zhang, Y., Perrigoue, J., Kessel, R., Peri, S., West, J., Giricz, O., Boultwood, J., Pellagatti, A., Ramesh, K. H., Montagna, C., Pradhan, K., Tyner, J. W. & Kennedy, B. K. & 5 others, , May 1 2023, (bioRxiv).Research output: Working paper › Preprint
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Trogocytosis of cancer-associated fibroblasts promotes pancreatic cancer growth and immune suppression via phospholipid scramblase anoctamin 6 (ANO6)
Ogier, C., Solomon, A. M. C., Lu, Z., Recoules, L., Klochkova, A., Gabitova-Cornell, L., Bayarmagnai, B., Restifo, D., Surumbayeva, A., Vendramini-Costa, D. B., Deneka, A. Y., Francescone, R., Lilly, A. C., Sipman, A., Gardiner, J. C., Luong, T., Franco-Barraza, J., Ibeme, N., Cai, K. Q. & Einarson, M. B. & 13 others, , 2023, (bioRxiv : the preprint server for biology).Research output: Working paper › Preprint
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Tumor-restrictive type III collagen in the breast cancer microenvironment: prognostic and therapeutic implications
Volk, S., Brisson, B. K., Dekky, B., Berger, A. C., Mauldin, E. A., Loebel, C., Yen, W., Stewart, D. C., Gillette, D., Assenmacher, C. A., Cukierman, E., Burdick, J. A. & Borges, V. F., 2023, (Research square).Research output: Working paper › Preprint
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2022
Integrative metatranscriptomic analysis reveals disease-specific microbiome-host interactions in oral squamous cell carcinoma: Preprint
Jain, V., Baraniya, D., Chen, T., Slifker, M., Alakwaa, F., Cai, K., Chitrala, K., Fundakowski, C. & Al-hebshi, N., May 24 2022.Research output: Working paper › Preprint
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2021
Clonal inactivation of telomerase promotes accelerated stem cell differentiation
Hasegawa, K., Zhao, Y., Garbuzov, A., Corces, R. M., Chen, L., Cheung, P., Wei, Y., Chang, H. Y. & Artandi, S. E., 2021, (bioRxiv).Research output: Working paper › Preprint
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2020
TGS1 controls snRNA 3’ end processing, prevents neurodegeneration and ameliorates SMN-dependent neurological phenotypes in vivo
Chen, L., Roake, C. M., Maccallini, P., Bavasso, F., Dehghannasiri, R., Santonicola, P., Mendoza-Ferreira, N., Scatolini, L., Rizzuti, L., Esposito, A., Gallotta, I., Francia, S., Cacchione, S., Hammerschmidt, M., Pittà, C. D., Sales, G., Salzman, J., Pellizzoni, L., Wirth, B. & Schiavi, E. D. & 3 others, , Jan 1 2020, 85 p. (bioRxiv).Research output: Working paper › Preprint